We've published code used to generate figures and analysis for the paper at
https://github.com/andersen-lab/VIC-Analysis
We've also hosted the code used to create two applications to explore the dataset. The code for both have been added as submodules in the same repository.
Links to the R markdown notebooks rendered as html pages are shown below.
- For the univariate analysis and clustering please see this R markdown file - Analysis
- For the feature selection analysis without IIP transform that performs just as well but selects for two neutralization features, please see - Feature Selection
- For the feature selection analysis using the IIP transform on Neut_VSV and unNeutFrac(as in paper), please see - Feature Selection with IIP transformation