freyja barcode-build

Build barcodes from a custom protobuf tree

freyja barcode-build [OPTIONS]

Options

--pb <pb>

protobuf tree

--outdir <outdir>

Output directory save updated files

--noncl

only include lineages that areconfirmed by cov-lineages

Default:

True

--pathogen <pathogen>

Pathogen of interest

Default:

SARS-CoV-2

Options:

SARS-CoV-2 | MPXV | H5NX | H1N1pdm | FLU-B-VIC | MEASLESN450 | MEASLES | RSVa | RSVb